punctuation - Where do I put a comma when I have quotes around a short story, and the sentence structure needs a comma?

Where do I put a comma when I have quotes around a short story, and the sentence structure needs a comma? I know that, generally, commas go inside of quotes, but what if the quotes are marking a short story. Here is the part of the sentence I'm having trouble with:

Gertrude Stein’s The Gentle Lena is vastly different from Edith Wharton’s “The Other Two,” yet the two female leads ...

Should it look like that, or should it look like this:

Gertrude Stein’s The Gentle Lena is vastly different from Edith Wharton’s “The Other Two”, yet the two female leads ...